SMTL ID : 5zx9.1

Crystal structure of apo form fibronectin-binding protein Apa from Mycobacterium tuberculosis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

homo-hexamer

Ligands

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: G.194, M.198, P.199, Y.200, P.201, G.202 Chain E: E.195 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain E Hydrogen bonds: A:Y.200 Water bridges: A:E.195, A:Y.224, E:E.195, E:E.195 GOL.2: 7 residues within 4Å: Chain B: G.194, M.198, P.199, Y.200, P.201, G.202 Chain D: E.195 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain D Hydrogen bonds: B:Y.200 Water bridges: B:E.195, B:Y.224, D:E.195, D:E.195 GOL.3: 7 residues within 4Å: Chain C: G.194, M.198, P.199, Y.200, P.201, G.202 Chain F: E.195 5 PLIP interactions: 3 interactions with chain C, 2 interactions with chain F Hydrogen bonds: C:Y.200 Water bridges: C:E.195, C:Y.224, F:E.195, F:E.195 GOL.4: 7 residues within 4Å: Chain B: E.195 Chain D: G.194, M.198, P.199, Y.200, P.201, G.202 6 PLIP interactions: 3 interactions with chain D, 3 interactions with chain B Hydrogen bonds: D:Y.200 Water bridges: D:E.195, D:Y.224, B:E.195, B:E.195, B:E.195 GOL.5: 7 residues within 4Å: Chain A: E.195 Chain E: G.194, M.198, P.199, Y.200, P.201, G.202 6 PLIP interactions: 3 interactions with chain E, 3 interactions with chain A Hydrogen bonds: E:Y.200 Water bridges: E:E.195, E:Y.224, A:E.195, A:E.195, A:E.195 GOL.6: 7 residues within 4Å: Chain C: E.195 Chain F: G.194, M.198, P.199, Y.200, P.201, G.202 6 PLIP interactions: 3 interactions with chain F, 3 interactions with chain C Hydrogen bonds: F:Y.200 Water bridges: F:E.195, F:Y.224, C:E.195, C:E.195, C:E.195

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kuo, C.J. et al., Functional and structural investigations of fibronectin-binding protein Apa from Mycobacterium tuberculosis. Biochim Biophys Acta Gen Subj (2019)

Release Date

2019-05-29

Peptides

Alanine and proline-rich secreted protein Apa: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

Alanine and proline-rich secreted protein Apa