SMTL ID : 5zxa.1

Crystal structure of fibronectin-binding protein Apa mutant from Mycobacterium tuberculosis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.77 Å

Oligo State

homo-hexamer

Ligands

6 x HG: MERCURY (II) ION(Non-covalent)

HG.1: 2 residues within 4Å: Chain A: C.160, N.269 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:C.160, H2O.7 HG.3: 2 residues within 4Å: Chain B: C.160, N.269 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:C.160, H2O.13 HG.5: 2 residues within 4Å: Chain C: C.160, N.269 2 PLIP interactions: 1 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:C.160, H2O.20 HG.7: 2 residues within 4Å: Chain D: C.160, N.269 2 PLIP interactions: 1 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:C.160, H2O.27 HG.9: 2 residues within 4Å: Chain E: C.160, N.269 2 PLIP interactions: 1 interactions with chain E, 1 Ligand-Water interactions Metal complexes: E:C.160, H2O.33 HG.11: 2 residues within 4Å: Chain F: C.160, N.269 2 PLIP interactions: 1 interactions with chain F, 1 Ligand-Water interactions Metal complexes: F:C.160, H2O.40

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain A: G.194, E.195, M.198, Y.200, G.202, R.204, V.226 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.194, A:G.202 GOL.4: 7 residues within 4Å: Chain B: G.194, E.195, M.198, Y.200, G.202, R.204, V.226 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:G.194, B:G.202 GOL.6: 7 residues within 4Å: Chain C: G.194, E.195, M.198, Y.200, G.202, R.204, V.226 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:G.194, C:G.202 GOL.8: 7 residues within 4Å: Chain D: G.194, E.195, M.198, Y.200, G.202, R.204, V.226 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:G.194, D:G.202 GOL.10: 7 residues within 4Å: Chain E: G.194, E.195, M.198, Y.200, G.202, R.204, V.226 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:G.194, E:G.202 GOL.12: 7 residues within 4Å: Chain F: G.194, E.195, M.198, Y.200, G.202, R.204, V.226 2 PLIP interactions: 2 interactions with chain F Hydrogen bonds: F:G.194, F:G.202

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kuo, C.J. et al., Functional and structural investigations of fibronectin-binding protein Apa from Mycobacterium tuberculosis. Biochim Biophys Acta Gen Subj (2019)

Release Date

2019-05-29

Peptides

Alanine and proline-rich secreted protein Apa: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

Alanine and proline-rich secreted protein Apa