SMTL ID : 5zxb.1

Crystal structure of ACK1 with compound 10d

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

2 x 9KO: N-{3-[7-{[6-(4-acetylpiperazin-1-yl)pyridin-3-yl]amino}-1-methyl-2-oxo-1,4-dihydropyrimido[4,5-d]pyrimidin-3(2H)-yl]-4-methylphenyl}-3-(trifluoromethyl)benzamide(Non-covalent)

9KO.1: 23 residues within 4Å: Chain A: L.16, V.24, A.40, V.41, K.42, E.61, M.65, L.68, I.74, T.89, E.90, L.91, A.92, P.93, G.95, L.127, F.132, H.134, L.143, I.152, G.153, D.154, F.155 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.16, A:A.40, A:T.89, A:F.132, A:L.143, A:D.154 Hydrogen bonds: A:E.61, A:A.92, A:A.92, A:D.154 Water bridges: A:K.42 Halogen bonds: A:I.152 9KO.2: 23 residues within 4Å: Chain B: L.16, V.24, A.40, K.42, E.61, M.65, L.68, L.73, I.74, T.89, E.90, L.91, A.92, P.93, G.95, L.127, F.132, H.134, L.143, I.152, G.153, D.154, F.155 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:L.16, B:T.89, B:L.143, B:D.154, B:F.155 Hydrogen bonds: B:E.61, B:E.61, B:A.92, B:A.92, B:D.154 Halogen bonds: B:G.153

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cho, H. et al., First SAR Study for Overriding NRAS Mutant Driven Acute Myeloid Leukemia. J. Med. Chem. (2018)

Release Date

2018-09-26

Peptides

Activated CDC42 kinase 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Activated CDC42 kinase 1

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