SMTL ID : 5zxi.1

Co-crystal structure of an Inhibitor in complex with human PPARdelta LBD

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x 9LU: 6-[2-({2-[4-(furan-2-yl)phenyl]-5-methyl-1H-imidazol-1-yl}methyl)phenoxy]hexanoic acid(Non-covalent)

9LU.1: 18 residues within 4Å: Chain A: V.79, R.82, C.83, T.86, T.87, H.121, I.124, L.128, L.137, V.139, V.146, I.161, I.162, K.165, H.247, M.251, L.267, Y.271 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:V.79, A:V.79, A:T.87, A:I.124, A:L.128, A:V.139, A:V.146, A:I.162, A:I.162, A:K.165 Hydrogen bonds: A:T.87, A:T.87 Salt bridges: A:H.121, A:H.247 9LU.2: 21 residues within 4Å: Chain B: L.53, V.79, F.80, R.82, C.83, T.86, T.87, H.121, I.124, L.128, L.137, V.139, V.146, L.151, I.161, I.162, K.165, H.247, M.251, L.267, Y.271 18 PLIP interactions: 18 interactions with chain B Hydrophobic interactions: B:L.53, B:V.79, B:F.80, B:I.124, B:L.128, B:L.137, B:V.139, B:V.146, B:L.151, B:I.162, B:I.162, B:K.165, B:K.165, B:L.267 Hydrogen bonds: B:T.87, B:Y.271 Salt bridges: B:H.121, B:H.247

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lagu, B. et al., Selective PPAR delta Modulators Improve Mitochondrial Function: Potential Treatment for Duchenne Muscular Dystrophy (DMD). ACS Med Chem Lett (2018)

Release Date

2019-04-03

Peptides

Peroxisome proliferator-activated receptor delta: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Peroxisome proliferator-activated receptor delta

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