SMTL ID : 5zzg.1

X-ray structure of F43Y/H64D sperm whale myoglobin in complex with TCP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 17 residues within 4Å: Chain A: T.39, K.42, Y.43, R.45, T.67, V.68, A.71, L.72, L.89, S.92, H.93, H.97, I.99, Y.103, L.104, F.138 Ligands: T6C.2 15 PLIP interactions: 15 interactions with chain A, Hydrophobic interactions: A:K.42, A:Y.43, A:T.67, A:V.68, A:L.89, A:L.89, A:I.99, A:I.99, A:Y.103, A:F.138 Hydrogen bonds: A:S.92 Salt bridges: A:R.45, A:H.93, A:H.97 Metal complexes: A:H.93

1 x T6C: 2,4,6-trichlorophenol(Non-covalent)

T6C.2: 8 residues within 4Å: Chain A: L.29, Y.43, F.46, D.64, T.67, V.68, I.107 Ligands: HEM.1 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:D.64, A:V.68 Hydrogen bonds: A:Y.43

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yin, L.L. et al., A Rationally Designed Myoglobin Exhibits a Catalytic Dehalogenation Efficiency More than 1000-Fold That of a Native Dehaloperoxidase. Acs Catalysis (2018)

Release Date

2018-10-03

Peptides

Myoglobin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Myoglobin

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