SMTL ID : 6a56.1

AJLec from the Sea Anemone Anthopleura japonica

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.20 Å

Oligo State

homo-dimer

Ligands

2 x BGC- GAL: beta-D-galactopyranose-(1-4)-beta-D-glucopyranose(Non-covalent)

BGC-GAL.1: 9 residues within 4Å: Chain A: C.48, Q.49, R.64, F.67, Y.97, E.141, M.147, D.150 Ligands: CA.3 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.64, A:Y.97, A:R.64, A:M.147, A:D.150 Water bridges: A:Q.49, A:R.64, A:D.150 BGC-GAL.2: 8 residues within 4Å: Chain B: C.48, R.64, F.67, Y.97, E.141, M.147, D.150 Ligands: CA.6 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.64, B:Y.97, B:R.64, B:M.147, B:D.150

4 x CA: CALCIUM ION(Non-covalent)

CA.3: 6 residues within 4Å: Chain A: C.48, E.141, M.147, D.150, N.151 Ligands: BGC-GAL.1 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.48, A:E.141, A:M.147, A:D.150 CA.4: 4 residues within 4Å: Chain A: N.21, D.142, N.145, E.148 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.142, A:D.142, A:E.148, H2O.3 CA.6: 6 residues within 4Å: Chain B: C.48, E.141, M.147, D.150, N.151 Ligands: BGC-GAL.2 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.48, B:E.141, B:M.147, B:D.150 CA.7: 4 residues within 4Å: Chain B: N.21, D.142, N.145, E.148 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.142, B:D.142, B:E.148, H2O.10

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.5: 8 residues within 4Å: Chain B: Q.1, G.4, G.5, W.6, K.35, S.36, Q.119, Y.162 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:Q.1, B:S.36, B:Q.119 Water bridges: B:W.6 Salt bridges: B:K.35

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Unno, H. et al., Identification, Characterization, and X-ray Crystallographic Analysis of a Novel Type of Lectin AJLec from the Sea Anemone Anthopleura japonica. Sci Rep (2018)

Release Date

2018-07-25

Peptides

AJLec: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

AJLec