SMTL ID : 6d4a.1 (1 other biounit)

Cell Surface Receptor with Bound Ligand at 1.75-A Resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: C.20, V.21, L.22, S.88 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.21, A:S.88 GOL.2: 1 residues within 4Å: Ligands: FVP.3 5 PLIP interactions: 5 interactions with chain A Water bridges: A:A.49, A:I.51, A:R.103, A:R.103, A:S.112

1 x FVP: 2-aminoethyl 5-{[(4-cyclohexyl-1H-1,2,3-triazol-1-yl)acetyl]amino}-3,5,9-trideoxy-9-[(4-hydroxy-3,5-dimethylbenzene-1-carbonyl)amino]-D-glycero-alpha-D-galacto-non-2-ulopyranonosyl-(2->6)-beta-D-galactopyranosyl-(1->4)-beta-D-glucopyranoside(Non-covalent)

FVP.3: 11 residues within 4Å: Chain A: F.5, Y.34, F.101, R.103, K.110, Y.111, S.112, Y.113, K.114, Q.117 Ligands: GOL.2 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:F.101, A:K.114 Hydrogen bonds: A:R.103, A:K.110, A:S.112, A:S.112, A:Q.117 Water bridges: A:K.110, A:K.110, A:S.112, A:K.114, A:K.114 Salt bridges: A:R.103

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Miles, L.A. et al., Small Molecule Binding to Alzheimer Risk Factor CD33 Promotes A beta Phagocytosis. Iscience (2019)

Release Date

2019-04-17

Peptides

Myeloid cell surface antigen CD33: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Myeloid cell surface antigen CD33

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