SMTL ID : 6e20.1

Crystal structure of the Dario rerio galectin-1-L2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x NDG- GAL: beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose(Non-covalent)

NDG-GAL.1: 8 residues within 4Å: Chain A: H.44, N.46, R.48, V.59, N.61, W.68, E.71, R.73 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.48, A:N.61, A:R.48, A:R.48, A:R.73 Water bridges: A:N.46, A:H.52, A:D.54 NDG-GAL.2: 8 residues within 4Å: Chain B: H.44, N.46, R.48, H.52, N.61, W.68, E.71, R.73 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:R.48, B:H.52, B:N.61, B:E.71, B:R.48, B:R.48, B:H.52, B:R.73 Water bridges: B:N.46, B:D.54, B:D.54

2 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 1 residues within 4Å: Chain A: G.53 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:G.53, H2O.1, H2O.3, H2O.3 MG.4: 1 residues within 4Å: Chain A: E.94 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.94, H2O.1, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ghosh, A. et al., Structure of the zebrafish galectin-1-L2 and model of its interaction with the infectious hematopoietic necrosis virus (IHNV) envelope glycoprotein. Glycobiology (2019)

Release Date

2019-03-20

Peptides

Galectin: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Galectin