- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.78 Å
- Oligo State
- homo-dimer
- Ligands
- 12 x DTK: (2~{S},3~{S},4~{R},5~{S},6~{S})-2-[[(2~{R},3~{S},4~{R},6~{S})-2-(hydroxymethyl)-6-methoxy-3-oxidanyl-oxan-4-yl]methyl]-6-methyl-oxane-3,4,5-triol(Non-covalent)
- 3 x NA: SODIUM ION(Non-functional Binders)
NA.7: 2 residues within 4Å:- Chain A: S.25, K.369
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:K.369, A:K.369
NA.18: 2 residues within 4Å:- Chain B: N.37, T.38
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:T.38
NA.19: 1 residues within 4Å:- Chain B: S.168
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:S.168, B:S.168
- 6 x CL: CHLORIDE ION(Non-functional Binders)
CL.8: 2 residues within 4Å:- Chain A: Q.311, S.312
Ligand excluded by PLIPCL.9: 3 residues within 4Å:- Chain A: R.336, I.363, D.364
Ligand excluded by PLIPCL.10: 2 residues within 4Å:- Chain A: P.306, W.307
Ligand excluded by PLIPCL.11: 5 residues within 4Å:- Chain A: T.26, I.27, A.28, T.222, R.240
Ligand excluded by PLIPCL.20: 5 residues within 4Å:- Chain B: T.26, I.27, A.28, T.222, R.240
Ligand excluded by PLIPCL.21: 2 residues within 4Å:- Chain B: Y.85, I.86
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Paulikova, G. et al., Fucosylated inhibitors of recently identified bangle lectin from Photorhabdus asymbiotica. Sci Rep (2019)
- Release Date
- 2019-02-06
- Peptides
- Photorhabdus asymbitoca lectin PHL: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.78 Å
- Oligo State
- homo-dimer
- Ligands
- 12 x DTK: (2~{S},3~{S},4~{R},5~{S},6~{S})-2-[[(2~{R},3~{S},4~{R},6~{S})-2-(hydroxymethyl)-6-methoxy-3-oxidanyl-oxan-4-yl]methyl]-6-methyl-oxane-3,4,5-triol(Non-covalent)
- 3 x NA: SODIUM ION(Non-functional Binders)
- 6 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Paulikova, G. et al., Fucosylated inhibitors of recently identified bangle lectin from Photorhabdus asymbiotica. Sci Rep (2019)
- Release Date
- 2019-02-06
- Peptides
- Photorhabdus asymbitoca lectin PHL: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B