SMTL ID : 6jys.1 (1 other biounit)

GII.13/21 noroviruses recognize glycans with a terminal beta-galactose via an unconventional glycan binding site

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

2 x A2G- GAL: beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-alpha-D-galactopyranose(Non-covalent)

A2G-GAL.1: 7 residues within 4Å: Chain A: W.74, S.133, T.135, S.136, N.171, N.173, T.174 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:N.173 Hydrogen bonds: A:N.173, A:S.133, A:T.135, A:T.135, A:N.171, A:N.173, A:N.173, A:T.174 Water bridges: A:S.136 A2G-GAL.2: 8 residues within 4Å: Chain B: W.74, S.133, T.135, S.136, N.171, E.172, N.173, T.174 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:N.173 Hydrogen bonds: B:E.172, B:N.173, B:S.133, B:T.135, B:N.171, B:N.173, B:N.173, B:T.174 Water bridges: B:D.72, B:T.135, B:T.135, B:S.136, B:S.136

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cong, X. et al., GII.13/21 Noroviruses Recognize Glycans with a Terminal beta-Galactose via an Unconventional Glycan Binding Site. J.Virol. (2019)

Release Date

2019-05-22

Peptides

human norovirus P protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

human norovirus P protein

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