SMTL ID : 6oai.1 (4 other biounits)

Crystal structure of P[6] rotavirus vp8* complexed with LNFPI

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-tetramer

Ligands

1 x BGC- GAL- NAG- GAL- FUC: alpha-L-fucopyranose-(1-2)-beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose

BGC-GAL-NAG-GAL-FUC.1: 10 residues within 4Å: Chain B: M.103, F.105, Y.106, N.107, W.110, T.120, T.121, Y.123, R.145, E.148 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.107, B:N.107, B:N.107, B:T.121, B:R.145, B:E.148

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, S. et al., Molecular basis of P[II] major human rotavirus VP8* domain recognition of histo-blood group antigens. Plos Pathog. (2020)

Release Date

2020-03-18

Peptides

Protease-sensitive outer capsid protein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Protease-sensitive outer capsid protein

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