SMTL ID : 6zvm.1

Botulinum neurotoxin B2 binding domain in complex with GD1a

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x BGC- GAL- NGA- GAL- SIA- SIA: N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-galactopyranose-(1-4)-[N-acetyl-alpha-neuraminic acid-(2-3)]beta-D-galactopyranose-(1-4)-beta-D-glucopyranose

BGC-GAL-NGA-GAL-SIA-SIA.1: 13 residues within 4Å: Chain A: G.251, N.252, E.336, E.337, I.387, H.388, S.407, W.409, Y.410, N.420, N.422, L.423, G.424 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.407, A:S.407, A:H.388 Water bridges: A:R.389, A:W.409, A:R.416, A:R.416

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: D.144, R.148, T.365, Y.366, Q.428 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:D.144, A:T.365, A:T.365, A:Y.366, A:Q.428 Water bridges: A:R.148, A:N.166 GOL.3: 3 residues within 4Å: Chain A: N.285, Y.287, E.438 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.287, A:E.438 Water bridges: A:E.438

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Davies, J.R. et al., Structural and Biochemical Characterization of Botulinum Neurotoxin Subtype B2 Binding to Its Receptors. Toxins (2020)

Release Date

2020-10-14

Peptides

Neurotoxin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

Neurotoxin

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