SMTL ID : 6a0i.1 (1 other biounit)

Crystal structure of human protein N-terminal asparagine amidohydrolase (NTAN1) C75S mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

12 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 3 residues within 4Å: Chain A: Q.39, E.188, Y.190 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.39, A:Q.39, A:E.188 Water bridges: A:Y.190 GOL.2: 6 residues within 4Å: Chain A: N.172, F.174, Y.178, L.258, A.259, E.260 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.172, A:L.258 Water bridges: A:E.260 GOL.3: 3 residues within 4Å: Chain A: N.297, E.298, E.303 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.298 GOL.4: 3 residues within 4Å: Chain A: R.120, D.153, H.155 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.153, A:D.153 GOL.5: 7 residues within 4Å: Chain A: Q.44, G.45, D.61, G.62, S.63, S.65, K.185 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.185, A:K.185 Water bridges: A:G.45 GOL.6: 3 residues within 4Å: Chain A: D.97, K.99, A.100 No protein-ligand interaction detected (PLIP) GOL.7: 6 residues within 4Å: Chain A: Y.48, Q.50, Q.51, D.70, D.71, R.197 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.51, A:D.71, A:R.197 GOL.8: 5 residues within 4Å: Chain A: P.103, M.106, N.107, K.110, Q.150 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.110, A:Q.150 Water bridges: A:E.151 GOL.9: 6 residues within 4Å: Chain A: S.130, D.131, Q.137, T.162, E.163 Ligands: PO4.14 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.131, A:D.131, A:E.163 GOL.10: 8 residues within 4Å: Chain A: L.4, V.5, E.6, P.25, R.120, L.156, V.157 Ligands: PO4.13 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:L.4, A:E.6 Water bridges: A:L.4, A:G.7, A:R.120 GOL.11: 6 residues within 4Å: Chain A: R.9, V.10, R.11, Q.14, A.22, H.23 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.11, A:R.11, A:R.11, A:R.11, A:Q.14 GOL.12: 4 residues within 4Å: Chain A: D.245, D.246, K.247, R.269 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.246, A:K.247, A:R.269

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.13: 4 residues within 4Å: Chain A: E.6, G.7, R.120 Ligands: GOL.10 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.6 Water bridges: A:R.120, A:H.155 Salt bridges: A:R.120 PO4.14: 4 residues within 4Å: Chain A: D.131, Q.134, Q.137 Ligands: GOL.9 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.131, A:D.131, A:Q.134 Water bridges: A:D.131

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Park, J.S. et al., Structural Analyses on the Deamidation of N-Terminal Asn in the Human N-Degron Pathway. Biomolecules (2020)

Release Date

2019-12-11

Peptides

Protein N-terminal asparagine amidohydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protein N-terminal asparagine amidohydrolase

Related Entries With Identical Sequence