SMTL ID : 6a16.1

Crystal structure of CYP90B1 in complex with uniconazole

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 29 residues within 4Å: Chain A: M.99, L.100, H.107, R.111, S.114, L.118, M.162, L.282, A.285, G.286, T.289, S.290, A.293, L.349, V.354, V.355, L.358, R.360, P.428, F.429, G.430, R.434, L.435, C.436, A.437, G.438, L.441, A.442 Ligands: UCZ.2 15 PLIP interactions: 15 interactions with chain A, Hydrophobic interactions: A:L.118, A:L.118, A:L.282, A:A.293, A:V.355, A:F.429 Water bridges: A:Y.86, A:Y.86, A:R.434, A:R.434 Salt bridges: A:H.107, A:R.111, A:R.360, A:R.434 Metal complexes: A:C.436

1 x UCZ: (1E,3S)-1-(4-chlorophenyl)-4,4-dimethyl-2-(1H-1,2,4-triazol-1-yl)pent-1-en-3-ol(Non-covalent)

UCZ.2: 13 residues within 4Å: Chain A: I.27, Y.29, Y.86, I.90, L.94, L.100, V.190, F.284, A.285, T.289, V.355, L.358 Ligands: HEM.1 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:Y.29, A:Y.29, A:Y.86, A:L.94, A:L.100, A:F.284, A:V.355, A:L.358 Hydrogen bonds: A:T.289 Water bridges: A:Y.86

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 7 residues within 4Å: Chain A: L.301, Q.302, P.305, V.308, R.312, N.458, W.459 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.302, A:W.459, A:W.459 Water bridges: A:P.305 GOL.4: 7 residues within 4Å: Chain A: A.303, C.304, P.305, K.306, A.307, L.398, F.399 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.306, A:F.399

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 6 residues within 4Å: Chain A: K.466, F.475, P.476, N.477, G.478, L.479 Ligand excluded by PLIP CL.6: 3 residues within 4Å: Chain A: Y.393, D.394, R.403 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fujiyama, K. et al., Structural insights into a key step of brassinosteroid biosynthesis and its inhibition. Nat.Plants (2019)

Release Date

2019-06-12

Peptides

Cytochrome P450 90B1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cytochrome P450 90B1