SMTL ID : 6a1f.1

Crystal structure of human DYRK1A in complex with compound 14

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: F.356, K.357, K.358 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:F.356, A:K.358 Salt bridges: A:K.357 SO4.2: 3 residues within 4Å: Chain A: K.141, R.177, S.178 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.178, A:S.178 Water bridges: A:A.179 Salt bridges: A:K.141, A:R.177 SO4.3: 5 residues within 4Å: Chain A: N.242, E.243, V.244, K.270 Ligands: SO4.5 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.243, A:V.244 Salt bridges: A:K.270 SO4.4: 2 residues within 4Å: Chain A: K.70, K.71 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.71 Water bridges: A:A.72 Salt bridges: A:K.70, A:K.71 SO4.5: 4 residues within 4Å: Chain A: R.202, R.205, E.243 Ligands: SO4.3 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.202, A:R.205 SO4.6: 2 residues within 4Å: Chain A: K.102, R.103 5 PLIP interactions: 5 interactions with chain A Water bridges: A:R.35, A:R.35, A:R.35, A:R.35 Salt bridges: A:R.103

1 x 9OF: 8-methoxy-5,5-dimethyl-5,6-dihydrobenzo[h]quinazolin-4-amine(Non-covalent)

9OF.7: 13 residues within 4Å: Chain A: I.42, K.44, F.47, V.50, A.63, V.99, F.115, E.116, M.117, L.118, L.171, V.183 Ligands: PGE.8 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:V.50, A:V.99, A:F.115, A:F.115, A:L.171, A:V.183 Hydrogen bonds: A:E.116, A:L.118

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.8: 11 residues within 4Å: Chain A: F.47, K.65, E.80, F.115, N.121, E.168, N.169, L.171, V.183, D.184 Ligands: 9OF.7 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.121, A:D.184

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fukuda, T. et al., Discovery of DS42450411 as a potent orally active hepcidin production inhibitor: Design and optimization of novel 4-aminopyrimidine derivatives. Bioorg. Med. Chem. Lett. (2018)

Release Date

2018-10-03

Peptides

Dual specificity tyrosine-phosphorylation-regulated kinase 1A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Dual specificity tyrosine-phosphorylation-regulated kinase 1A

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