SMTL ID : 6a20.1

Crystal Structure of auto-inhibited Kinesin-3 KIF13B

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 12 residues within 4Å: Chain A: R.11, R.13, P.14, Q.104, T.105, G.106, S.107, G.108, K.109, S.110, Y.111 Ligands: MG.2 20 PLIP interactions: 20 interactions with chain A Hydrogen bonds: A:R.11, A:G.106, A:S.107, A:G.108, A:K.109, A:S.110, A:Y.111, A:Y.111 Water bridges: A:R.11, A:N.16, A:S.64, A:S.64, A:K.72, A:K.72, A:T.105, A:K.109, A:S.110 Salt bridges: A:K.109 pi-Stacking: A:Y.111, A:Y.111

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: S.110, D.253 Ligands: ADP.1 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:S.110, H2O.2, H2O.3, H2O.4, H2O.5 MG.3: 4 residues within 4Å: Chain A: S.149, K.188, K.227, T.229 No protein-ligand interaction detected (PLIP)

1 x P6G: HEXAETHYLENE GLYCOL(Non-functional Binders)

P6G.4: 3 residues within 4Å: Chain A: E.132, R.133, K.136 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.132 Water bridges: A:S.128, A:E.132

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ren, J.Q. et al., Coiled-coil 1-mediated fastening of the neck and motor domains for kinesin-3 autoinhibition. Proc. Natl. Acad. Sci. U.S.A. (2018)

Release Date

2018-11-21

Peptides

Kinesin family member 13B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Kinesin family member 13B