- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x 9QR: 5-(4-{3-[(2,4-diamino-6-ethylpyrimidin-5-yl)oxy]propoxy}phenyl)-6-ethylpyrimidine-2,4-diamine(Non-covalent)
- 2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
NAP.2: 30 residues within 4Å:- Chain A: C.15, A.16, L.40, G.41, N.42, G.44, V.45, L.46, W.48, G.105, R.106, T.107, S.108, L.127, S.128, R.129, T.130, N.144, K.145, V.146, I.164, G.165, G.166, S.167, V.168, V.169, Y.170, E.172, V.195
- Ligands: 9QR.1
24 PLIP interactions:24 interactions with chain A- Hydrogen bonds: A:A.16, A:A.16, A:N.42, A:G.44, A:G.105, A:R.106, A:T.107, A:T.107, A:S.108, A:S.111, A:S.128, A:R.129, A:T.130, A:V.146, A:G.165, A:S.167, A:V.168, A:V.169, A:E.172
- Water bridges: A:G.44, A:G.44, A:R.129
- Salt bridges: A:R.106
- pi-Cation interactions: A:R.129
NAP.6: 27 residues within 4Å:- Chain B: C.15, A.16, L.40, G.41, N.42, G.44, V.45, L.46, G.105, R.106, T.107, S.108, L.127, S.128, R.129, T.130, N.144, I.164, G.165, G.166, S.167, V.168, V.169, Y.170, E.172, V.195
- Ligands: 9QR.5
22 PLIP interactions:22 interactions with chain B- Hydrogen bonds: B:A.16, B:N.42, B:G.44, B:G.105, B:G.105, B:R.106, B:T.107, B:T.107, B:S.108, B:S.111, B:R.129, B:R.129, B:T.130, B:S.167, B:V.168, B:V.169, B:Y.170, B:Y.170, B:E.172
- Water bridges: B:G.44
- Salt bridges: B:R.106
- pi-Cation interactions: B:R.129
- 2 x UMP: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE(Non-covalent)
UMP.3: 14 residues within 4Å:- Chain A: R.345, C.490, H.491, Q.509, R.510, S.511, C.512, D.513, G.517, N.521, H.551, Y.553
- Chain B: R.470, R.471
14 PLIP interactions:5 interactions with chain B, 9 interactions with chain A- Water bridges: B:R.470, B:R.471, B:R.471
- Salt bridges: B:R.470, B:R.471, A:R.345, A:R.510
- Hydrophobic interactions: A:D.513
- Hydrogen bonds: A:Q.509, A:S.511, A:D.513, A:N.521, A:N.521, A:H.551
UMP.7: 14 residues within 4Å:- Chain A: R.470, R.471
- Chain B: R.345, C.490, H.491, Q.509, R.510, S.511, C.512, D.513, G.517, N.521, H.551, Y.553
13 PLIP interactions:4 interactions with chain A, 9 interactions with chain B- Water bridges: A:R.470, A:R.471
- Salt bridges: A:R.470, A:R.471, B:R.345, B:R.510
- Hydrogen bonds: B:Q.509, B:S.511, B:D.513, B:N.521, B:N.521, B:H.551, B:Y.553
- 2 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.4: 4 residues within 4Å:- Chain A: N.330, I.331, D.334, Y.356
2 PLIP interactions:2 interactions with chain A- Water bridges: A:D.334, A:D.334
PO4.8: 4 residues within 4Å:- Chain B: N.330, I.331, D.334, Y.356
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:D.334
- Water bridges: B:N.330, B:D.334, B:D.334, B:I.357
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Tarnchompoo, B. et al., Hybrid Inhibitors of Malarial Dihydrofolate Reductase with Dual Binding Modes That Can Forestall Resistance. ACS Med Chem Lett (2018)
- Release Date
- 2019-04-24
- Peptides
- Bifunctional dihydrofolate reductase-thymidylate synthase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x 9QR: 5-(4-{3-[(2,4-diamino-6-ethylpyrimidin-5-yl)oxy]propoxy}phenyl)-6-ethylpyrimidine-2,4-diamine(Non-covalent)
- 2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
- 2 x UMP: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE(Non-covalent)
- 2 x PO4: PHOSPHATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Tarnchompoo, B. et al., Hybrid Inhibitors of Malarial Dihydrofolate Reductase with Dual Binding Modes That Can Forestall Resistance. ACS Med Chem Lett (2018)
- Release Date
- 2019-04-24
- Peptides
- Bifunctional dihydrofolate reductase-thymidylate synthase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B