SMTL ID : 6a3f.1

Levoglucosan dehydrogenase, apo form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-tetramer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: D.323, Q.324, R.327 Chain D: R.331 7 PLIP interactions: 3 interactions with chain D, 4 interactions with chain A Water bridges: D:D.323, D:R.331, A:R.331 Salt bridges: D:R.331 Hydrogen bonds: A:D.323, A:Q.324, A:Q.324 SO4.2: 3 residues within 4Å: Chain A: G.223, E.224, N.276 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.224, A:N.276, A:N.276 SO4.3: 3 residues within 4Å: Chain B: G.32, W.195, R.196 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:W.195 Salt bridges: B:R.196 SO4.4: 4 residues within 4Å: Chain B: R.331 Chain C: D.323, Q.324, R.327 5 PLIP interactions: 3 interactions with chain C, 2 interactions with chain B Hydrogen bonds: C:Q.324, C:Q.324 Water bridges: C:R.331, B:R.331 Salt bridges: B:R.331 SO4.5: 3 residues within 4Å: Chain C: G.223, E.224, N.276 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:E.224, C:N.276, C:N.276 SO4.6: 3 residues within 4Å: Chain D: G.32, W.195, R.196 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:W.195 Salt bridges: D:R.196

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sugiura, M. et al., Identification, functional characterization, and crystal structure determination of bacterial levoglucosan dehydrogenase. J. Biol. Chem. (2018)

Release Date

2018-09-26

Peptides

Putative dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Putative dehydrogenase

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