SMTL ID : 6a48.1

Crystal structure of reelin N-terminal region

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

5 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: N.170, D.172, D.194, N.196, D.473 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.172, A:D.194, A:N.196, A:D.473, H2O.2 CA.2: 4 residues within 4Å: Chain A: S.521, S.550, K.552, D.664 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:S.521, A:K.552, A:D.664, A:D.664, H2O.1 CA.3: 5 residues within 4Å: Chain A: D.12, D.14, H.43, N.45, D.153 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.12, A:D.14, A:H.43, A:N.45, H2O.3 CA.4: 6 residues within 4Å: Chain A: E.230, E.232, S.254, G.255, L.256, D.363 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.230, A:E.232, A:S.254, A:L.256, H2O.2 CA.5: 4 residues within 4Å: Chain A: D.596, E.600, S.654, D.659 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.596, A:E.600, A:E.600, A:S.654, A:D.659

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.6: 1 residues within 4Å: Chain A: N.96 No protein-ligand interaction detected (PLIP) NAG.7: 4 residues within 4Å: Chain A: N.64, T.66, T.67, E.129 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.64, A:T.67, A:E.129 NAG.8: 2 residues within 4Å: Chain A: N.112, S.114 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.114, A:S.114

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nagae, M. et al., Structural studies of reelin N-terminal region provides insights into a unique structural arrangement and functional multimerization. J.Biochem. (2021)

Release Date

2019-06-19

Peptides

Reelin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Reelin