SMTL ID : 6a6l.1

Crystal structure of the cold shock domain of YB-1 in complex with m5C RNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.78 Å

Oligo State

monomer

Ligands

1 x C- A- U- 5MC: RNA (5'-R(P*CP*AP*UP*(5MC))-3')(Non-covalent)

C-A-U-5MC.1: 12 residues within 4Å: Chain A: K.17, W.18, N.20, N.23, Y.25, F.27, D.36, F.38, H.40, K.71, G.72, A.73 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.20, A:N.23 pi-Stacking: A:W.18, A:W.18

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, Y., Crystal structure of the cold shock domain of YB-1 in complex with m5C RNA. To Be Published

Release Date

2019-06-19

Peptides

Nuclease-sensitive element-binding protein 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Nuclease-sensitive element-binding protein 1

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