SMTL ID : 6a6p.1 (1 other biounit)

Crystal Structure of Peroxisome Proliferator-Activated Receptor Delta (PPARd)LBD in Complex with DN003316

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x 9RF: {2-methyl-4-[({5-[4-(trifluoromethyl)phenyl]-1,3,4-thiadiazol-2-yl}methyl)sulfanyl]phenoxy}acetic acid(Non-covalent)

9RF.1: 22 residues within 4Å: Chain A: I.43, W.58, V.75, F.76, R.78, C.79, Q.80, T.82, T.83, H.117, F.121, L.124, V.135, V.142, L.147, I.157, I.158, H.243, M.247, L.263, Y.267 Ligands: B7G.2 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:V.75, A:F.76, A:R.78, A:F.121, A:V.135, A:I.157 Hydrogen bonds: A:T.82 Salt bridges: A:H.117, A:H.243 pi-Stacking: A:H.243

1 x B7G: heptyl beta-D-glucopyranoside(Non-covalent)

B7G.2: 15 residues within 4Å: Chain A: F.76, Q.80, A.244, M.247, Q.248, K.251, L.259, H.260, L.263, Q.264, Y.267, K.268, D.269, M.270 Ligands: 9RF.1 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:K.251, A:L.259, A:L.259, A:L.263 Hydrogen bonds: A:K.251, A:Q.264, A:D.269, A:D.269, A:D.269, A:M.270 Water bridges: A:Q.248

1 x PE3: 3,6,9,12,15,18,21,24,27,30,33,36,39-TRIDECAOXAHENTETRACONTANE-1,41-DIOL(Non-functional Binders)

PE3.3: 19 residues within 4Å: Chain A: G.64, P.66, Y.77, Q.80, C.81, V.84, V.87, R.88, T.91, V.109, L.112, K.113, S.258, L.259, H.260, P.261, L.262, E.265, I.266 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.88, A:K.113, A:S.258, A:E.265

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chin, J.W. et al., Crystal Structure of Peroxisome Proliferator-Activated Receptor Delta (PPARd)LBD in Complex with DN003316. To Be Published

Release Date

2019-07-10

Peptides

Peroxisome proliferator-activated receptor delta: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peroxisome proliferator-activated receptor delta

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