SMTL ID : 6a9c.1

Crystal Structure c-terminal SH3 domain of Myosin IB from Entamoeba histolytica bound to EhFP10(GEF) peptide.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.98 Å

Oligo State

homo-dimer

Ligands

1 x LYS- VAL- ALA- PRO- PRO- ILE- PRO- HIS- ARG: Peptide from Rho guanine nucleotide exchange factor(Non-covalent)

LYS-VAL-ALA-PRO-PRO-ILE-PRO-HIS-ARG.1: 10 residues within 4Å: Chain A: Y.11, Y.13, E.36, G.37, W.38, P.51, N.52, N.53, Y.54 Ligands: SO4.3 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:Y.11, A:Y.13, A:Y.54 Hydrogen bonds: A:N.53, A:Y.54 Salt bridges: A:E.36

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: E.33, K.40, W.49 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.33 Salt bridges: A:K.40 SO4.3: 5 residues within 4Å: Chain A: D.35, E.36, G.37, N.52 Ligands: LYS-VAL-ALA-PRO-PRO-ILE-PRO-HIS-ARG.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.36, A:G.37, A:N.52

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gautam, G. et al., EhFP10: A FYVE family GEF interacts with myosin IB to regulate cytoskeletal dynamics during endocytosis in Entamoeba histolytica. Plos Pathog. (2019)

Release Date

2019-06-12

Peptides

Unconventional myosin IB: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Unconventional myosin IB