SMTL ID : 6a9s.1

The crystal structure of vaccinia virus A26 (residues 1-397)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.18 Å

Oligo State

monomer

Ligands

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 8 residues within 4Å: Chain A: W.190, V.193, G.195, L.225, S.228, G.229, R.230, W.247 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:V.193, A:G.195, A:L.225, A:R.230 Water bridges: A:T.382 EDO.2: 2 residues within 4Å: Chain A: Y.84, K.88 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.88 Water bridges: A:D.67, A:D.67, A:N.69, A:K.88 EDO.3: 3 residues within 4Å: Chain A: A.97, N.100, G.101 No protein-ligand interaction detected (PLIP) EDO.4: 6 residues within 4Å: Chain A: V.292, F.294, K.301, V.302, T.303, E.304 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.303, A:E.304 EDO.5: 2 residues within 4Å: Chain A: R.317, I.319 1 PLIP interactions: 1 interactions with chain A Water bridges: A:R.317 EDO.6: 7 residues within 4Å: Chain A: I.56, I.183, G.184, P.186, Y.259, G.260, G.262 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.184, A:Y.259 EDO.7: 4 residues within 4Å: Chain A: Q.83, P.139, Y.142, D.143 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.143 Water bridges: A:S.144 EDO.8: 6 residues within 4Å: Chain A: G.75, P.77, F.191, R.230, F.231, E.245 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.75 Water bridges: A:R.230, A:R.230

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chang, H.W. et al., Vaccinia viral A26 protein is a fusion suppressor of mature virus and triggers membrane fusion through conformational change at low pH. Plos Pathog. (2019)

Release Date

2019-06-12

Peptides

Protein A26: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protein A26