SMTL ID : 6a9u.1

Crystal strcture of Icp55 from Saccharomyces cerevisiae bound to apstatin inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x 01B- PRO- PRO- ALA- NH2: apstatin(Non-covalent)

01B-PRO-PRO-ALA-NH2.1: 13 residues within 4Å: Chain A: Y.240, I.241, D.271, D.282, H.357, Y.358, G.360, H.361, H.368, E.388, E.411 Ligands: MN.2, MN.3 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:H.361 Hydrogen bonds: A:D.282, A:D.282, A:Y.358

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.2: 7 residues within 4Å: Chain A: Y.240, D.271, D.282, S.284, E.411 Ligands: 01B-PRO-PRO-ALA-NH2.1, MN.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.271, A:D.271, A:D.282, A:E.411 MN.3: 6 residues within 4Å: Chain A: D.282, H.361, E.388, E.411 Ligands: 01B-PRO-PRO-ALA-NH2.1, MN.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.282, A:H.361, A:E.388, A:E.411

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Singh, R. et al., Crystal structures and biochemical analyses of intermediate cleavage peptidase: role of dynamics in enzymatic function. FEBS Lett. (2019)

Release Date

2019-01-16

Peptides

Intermediate cleaving peptidase 55: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Intermediate cleaving peptidase 55

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