- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.47 Å
- Oligo State
- homo-dimer
- Ligands
- 6 x MG: MAGNESIUM ION(Non-covalent)
- 2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
ATP.4: 19 residues within 4Å:- Chain A: R.150, E.152, E.157, H.158, L.159, F.162, M.164, E.216, L.217, S.218, S.219, G.241, G.243, R.246, I.257
- Ligands: MG.1, MG.2, MG.3, 9VL.5
20 PLIP interactions:20 interactions with chain A- Hydrogen bonds: A:E.152, A:L.159, A:E.216, A:S.219, A:G.243, A:R.246
- Water bridges: A:R.150, A:R.150, A:R.150, A:R.150, A:H.158, A:R.246
- Salt bridges: A:R.150, A:R.150, A:H.158, A:R.246
- pi-Stacking: A:F.162, A:F.162
- pi-Cation interactions: A:R.246, A:R.246
ATP.9: 19 residues within 4Å:- Chain B: R.150, E.152, E.157, H.158, L.159, F.162, M.164, E.216, L.217, S.218, S.219, G.241, G.243, R.246, I.257
- Ligands: MG.6, MG.7, MG.8, 9VL.10
21 PLIP interactions:21 interactions with chain B- Hydrogen bonds: B:E.152, B:E.152, B:L.159, B:E.216, B:S.219, B:G.243, B:R.246
- Water bridges: B:R.150, B:R.150, B:R.150, B:R.150, B:H.158, B:R.246
- Salt bridges: B:R.150, B:R.150, B:H.158, B:R.246
- pi-Stacking: B:F.162, B:F.162
- pi-Cation interactions: B:R.246, B:R.246
- 2 x 9VL: (2S)-2-azanyl-6-[(2-bromophenyl)methoxycarbonylamino]hexanoic acid(Non-covalent)
9VL.5: 17 residues within 4Å:- Chain A: M.96, M.120, A.122, A.126, L.129, M.164, N.166, C.168, F.204, S.219, L.227, D.228, W.231, I.233, W.237, G.241
- Ligands: ATP.4
13 PLIP interactions:13 interactions with chain A- Hydrophobic interactions: A:A.126, A:F.204, A:W.231, A:W.231, A:I.233, A:W.237
- Hydrogen bonds: A:N.166, A:N.166, A:S.219, A:S.219, A:G.241
- Water bridges: A:A.122, A:N.166
9VL.10: 17 residues within 4Å:- Chain B: M.96, M.120, A.122, A.126, L.129, M.164, N.166, C.168, F.204, S.219, L.227, D.228, W.231, I.233, W.237, G.241
- Ligands: ATP.9
13 PLIP interactions:13 interactions with chain B- Hydrophobic interactions: B:A.126, B:F.204, B:W.231, B:W.231, B:I.233, B:W.237
- Hydrogen bonds: B:N.166, B:N.166, B:S.219, B:S.219, B:G.241
- Water bridges: B:A.122, B:N.166
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yanagisawa, T. et al., Structural Basis for Genetic-Code Expansion with Bulky Lysine Derivatives by an Engineered Pyrrolysyl-tRNA Synthetase. Cell Chem Biol (2019)
- Release Date
- 2019-04-17
- Peptides
- Pyrrolysine--tRNA ligase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.47 Å
- Oligo State
- homo-dimer
- Ligands
- 6 x MG: MAGNESIUM ION(Non-covalent)
- 2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
- 2 x 9VL: (2S)-2-azanyl-6-[(2-bromophenyl)methoxycarbonylamino]hexanoic acid(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yanagisawa, T. et al., Structural Basis for Genetic-Code Expansion with Bulky Lysine Derivatives by an Engineered Pyrrolysyl-tRNA Synthetase. Cell Chem Biol (2019)
- Release Date
- 2019-04-17
- Peptides
- Pyrrolysine--tRNA ligase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A