SMTL ID : 6abo.1

human XRCC4 and IFFO1 complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.65 Å

Oligo State

hetero-2-2-mer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: M.75, K.79, E.83, K.113, F.120 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.113 GOL.4: 5 residues within 4Å: Chain C: M.75, K.79, E.83, K.113, F.120 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:K.113

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: K.18, S.20, R.21, S.90 Chain C: L.145 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.21, A:S.90 Water bridges: A:K.18 Salt bridges: A:K.18, A:R.21 SO4.3: 3 residues within 4Å: Chain A: R.17, Q.35, S.37 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.37 Water bridges: A:Q.35, A:Q.35 Salt bridges: A:R.17 SO4.5: 5 residues within 4Å: Chain A: L.145 Chain C: K.18, S.20, R.21, S.90 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:R.21, C:S.90 Water bridges: C:K.18 Salt bridges: C:K.18, C:R.21 SO4.6: 3 residues within 4Å: Chain C: R.17, Q.35, S.37 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:S.37 Water bridges: C:Q.35, C:Q.35 Salt bridges: C:R.17

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, W. et al., The nucleoskeleton protein IFFO1 immobilizes broken DNA and suppresses chromosome translocation during tumorigenesis. Nat.Cell Biol. (2019)

Release Date

2019-07-31

Peptides

DNA repair protein XRCC4: AC
Intermediate filament family orphan 1: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

DNA repair protein XRCC4

Intermediate filament family orphan 1