SMTL ID : 6ac5.1

Crystal structure of RIPK1 death domain GlcNAcylated by EPEC effector NleB

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

monomer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: R.43, T.48, Q.49 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.43, A:Q.49 Water bridges: A:K.44, A:K.44, A:K.44, A:K.44

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: H.37, W.38, K.39, N.40 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.39, A:N.40 Water bridges: A:W.38, A:W.38, A:C.41 Salt bridges: A:H.37 SO4.3: 3 residues within 4Å: Chain A: G.35, K.36, H.37 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.36 Water bridges: A:H.37, A:H.37 Salt bridges: A:K.36

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ding, J. et al., Structural and Functional Insights into Host Death Domains Inactivation by the Bacterial Arginine GlcNAcyltransferase Effector. Mol.Cell (2019)

Release Date

2019-05-01

Peptides

Receptor-interacting serine/threonine-protein kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Receptor-interacting serine/threonine-protein kinase 1