SMTL ID : 6aci.1

Crystal structure of EPEC effector NleB in complex with FADD death domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.87 Å

Oligo State

hetero-1-1-mer

Ligands

1 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)

UDP.1: 16 residues within 4Å: Chain A: Q.25, W.26, F.27, Y.49, F.162, R.166, Y.196, D.198, A.199, D.200, N.297, S.299, S.304, S.305, W.306 Ligands: MN.2 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:W.306 Hydrogen bonds: A:Q.25, A:F.27, A:F.27, A:Y.49, A:R.166, A:D.198, A:A.199, A:S.305 Water bridges: A:Q.25, A:R.166, A:D.198, A:D.200, A:N.297, A:S.299, A:S.304, A:S.304 pi-Stacking: A:W.26, A:F.162

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.2: 4 residues within 4Å: Chain A: D.200, N.297, S.299 Ligands: UDP.1 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.200, A:S.299, H2O.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ding, J. et al., Structural and Functional Insights into Host Death Domains Inactivation by the Bacterial Arginine GlcNAcyltransferase Effector. Mol.Cell (2019)

Release Date

2019-05-01

Peptides

T3SS secreted effector NleB homolog: A
FAS-associated death domain protein: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
H

T3SS secreted effector NleB homolog

FAS-associated death domain protein