SMTL ID : 6acs.1

poly-cis-prenyltransferase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.81 Å

Oligo State

homo-dimer

Ligands

2 x CIT: CITRIC ACID(Non-functional Binders)

CIT.1: 10 residues within 4Å: Chain A: M.17, D.18, G.19, N.20, A.61, F.62, S.63, S.64, W.213 Ligands: GOL.4 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:M.17, A:A.61 Hydrogen bonds: A:N.20, A:N.20, A:A.61, A:S.63, A:S.64, A:S.64 Water bridges: A:G.19, A:N.21, A:S.63, A:S.63, A:W.213 CIT.2: 6 residues within 4Å: Chain A: D.18, N.21, F.62, S.63, N.66, R.69 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:F.62 Hydrogen bonds: A:N.21, A:N.66 Water bridges: A:D.18, A:D.18, A:G.19, A:N.21, A:N.21, A:S.63, A:S.63 Salt bridges: A:R.69, A:R.69

2 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.3: 5 residues within 4Å: Chain A: M.78, E.82, P.109, H.111, L.112 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:P.109, A:P.109 Hydrogen bonds: A:E.82, A:L.112 Water bridges: A:H.111 IPA.5: 4 residues within 4Å: Chain B: Y.207, F.208, H.223, V.227 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:Y.207, B:V.227 Hydrogen bonds: B:Y.207, B:H.223

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 6 residues within 4Å: Chain A: M.17, A.61, E.65, L.81, T.84 Ligands: CIT.1 1 PLIP interactions: 1 interactions with chain A Water bridges: A:A.134 GOL.6: 6 residues within 4Å: Chain B: F.60, A.61, A.134, V.135, S.136, Y.137 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:A.61, B:S.136, B:Y.137, B:Y.137 Water bridges: B:A.134

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ko, T.P. et al., Structure of undecaprenyl pyrophosphate synthase from Acinetobacter baumannii. Acta Crystallogr F Struct Biol Commun (2018)

Release Date

2018-12-19

Peptides

Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific): AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific)