SMTL ID : 6acx.2 (2 other biounits)

Crystal structure of Mycobacterium smegmatis Mfd in complex with ADP + Pi at 3.5 A resolution.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.50 Å

Oligo State

monomer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: G.89, S.112, R.158, R.345 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.89, A:S.112 Salt bridges: A:R.158, A:R.345 SO4.2: 3 residues within 4Å: Chain A: R.1175, A.1176, T.1177 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.1176, A:T.1177 SO4.3: 2 residues within 4Å: Chain A: R.1164, R.1167 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.1164, A:R.1167

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.4: 3 residues within 4Å: Chain A: Q.729, W.920, S.940 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.729, A:S.940, A:S.940

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.5: 11 residues within 4Å: Chain A: F.659, F.661, T.662, V.692, G.693, Y.694, G.695, K.696, T.697, P.842, D.938 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:T.662, A:T.662, A:G.693, A:Y.694, A:G.695, A:K.696, A:T.697, A:T.697, A:T.697 Water bridges: A:D.938 Salt bridges: A:K.696 pi-Stacking: A:F.661

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Putta, S. et al., Structural basis for nucleotide-mediated remodelling mechanism of Mycobacterium Mfd. To Be Published

Release Date

2019-08-28

Peptides

Mycobacterium smegmatis Mfd: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mycobacterium smegmatis Mfd

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