- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x URC: URIC ACID(Non-covalent)
- 2 x BCT: BICARBONATE ION(Non-functional Binders)
BCT.2: 9 residues within 4Å:- Chain A: R.839, H.840, I.877, T.909, A.910, F.911, F.914, G.915, Q.918
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:R.839, A:F.911, A:F.914, A:G.915, A:Q.918
BCT.10: 9 residues within 4Å:- Chain B: R.839, H.840, I.877, T.909, A.910, F.911, F.914, G.915, Q.918
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:H.840, B:F.911, B:F.911
- 4 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
FES.3: 10 residues within 4Å:- Chain A: G.42, C.43, G.44, G.46, G.47, C.48, G.49, C.51, N.71, C.73
4 PLIP interactions:4 interactions with chain A,- Metal complexes: A:C.43, A:C.48, A:C.51, A:C.73
FES.4: 8 residues within 4Å:- Chain A: Q.111, C.112, G.113, C.115, C.147, R.148, C.149, L.744
4 PLIP interactions:4 interactions with chain A,- Metal complexes: A:C.112, A:C.115, A:C.147, A:C.149
FES.7: 8 residues within 4Å:- Chain B: Q.111, C.112, G.113, C.115, C.147, R.148, C.149, L.744
4 PLIP interactions:4 interactions with chain B,- Metal complexes: B:C.112, B:C.115, B:C.147, B:C.149
FES.8: 11 residues within 4Å:- Chain B: L.41, G.42, C.43, G.44, G.46, G.47, C.48, G.49, C.51, N.71, C.73
4 PLIP interactions:4 interactions with chain B,- Metal complexes: B:C.43, B:C.48, B:C.51, B:C.73
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
FAD.5: 30 residues within 4Å:- Chain A: E.45, G.46, K.255, L.256, V.257, V.258, G.259, N.260, T.261, E.262, I.263, A.300, W.335, F.336, A.337, V.341, V.344, A.345, S.346, G.349, N.350, I.352, T.353, S.358, D.359, I.402, L.403, K.421, D.429
- Ligands: NAI.6
24 PLIP interactions:24 interactions with chain A- Hydrophobic interactions: A:A.337, A:V.341
- Hydrogen bonds: A:K.255, A:L.256, A:L.256, A:V.258, A:G.259, A:N.260, A:T.261, A:T.261, A:E.262, A:I.263, A:A.337, A:S.346, A:N.350, A:D.359, A:D.359, A:D.359, A:L.403, A:L.403
- Water bridges: A:S.346, A:N.350, A:T.353
- pi-Stacking: A:F.336
FAD.11: 30 residues within 4Å:- Chain B: E.45, G.46, K.255, L.256, V.257, V.258, G.259, N.260, T.261, E.262, I.263, A.300, W.335, F.336, A.337, V.341, V.344, A.345, S.346, G.349, N.350, I.352, T.353, S.358, D.359, I.402, L.403, K.421, D.429
- Ligands: NAI.12
28 PLIP interactions:28 interactions with chain B- Hydrophobic interactions: B:A.337, B:V.341
- Hydrogen bonds: B:L.256, B:L.256, B:V.258, B:G.259, B:N.260, B:T.261, B:T.261, B:E.262, B:E.262, B:I.263, B:A.337, B:S.346, B:N.350, B:D.359, B:D.359, B:L.403, B:L.403, B:K.421
- Water bridges: B:K.255, B:K.255, B:K.255, B:E.266, B:E.266, B:S.346, B:T.353
- pi-Stacking: B:F.336
- 2 x NAI: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE(Non-covalent)
NAI.6: 19 residues within 4Å:- Chain A: E.262, S.355, P.356, I.357, Y.392, R.393, A.428, D.429, I.430, G.457, A.459, D.460, L.495, P.500, G.501, R.507, S.1225, K.1228
- Ligands: FAD.5
16 PLIP interactions:16 interactions with chain A- Hydrophobic interactions: A:I.430
- Hydrogen bonds: A:E.262, A:Y.392, A:Y.392, A:R.393, A:R.393, A:R.507, A:K.1228
- Water bridges: A:E.45, A:E.45, A:A.431, A:G.457, A:R.507
- Salt bridges: A:K.270, A:R.393, A:R.393
NAI.12: 20 residues within 4Å:- Chain B: E.262, K.270, S.355, P.356, I.357, Y.392, R.393, A.428, D.429, I.430, G.457, M.458, A.459, D.460, L.495, P.500, G.501, R.507, S.1225
- Ligands: FAD.11
16 PLIP interactions:16 interactions with chain B- Hydrophobic interactions: B:I.430
- Hydrogen bonds: B:E.262, B:Y.392, B:R.393, B:R.393, B:R.507
- Water bridges: B:E.45, B:E.45, B:A.431, B:G.457, B:D.460, B:D.460, B:K.1228
- Salt bridges: B:K.270, B:R.393, B:R.393
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Okamoto, K. et al., Rat Xanthine oxidoreductase, D428A variant, NAD bound form. To Be Published
- Release Date
- 2019-07-31
- Peptides
- Xanthine dehydrogenase/oxidase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x URC: URIC ACID(Non-covalent)
- 2 x BCT: BICARBONATE ION(Non-functional Binders)
- 4 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 2 x NAI: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Okamoto, K. et al., Rat Xanthine oxidoreductase, D428A variant, NAD bound form. To Be Published
- Release Date
- 2019-07-31
- Peptides
- Xanthine dehydrogenase/oxidase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B