SMTL ID : 6adi.1

Crystal Structures of IDH2 R140Q in complex with AG-881

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.97 Å

Oligo State

homo-dimer

Ligands

2 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NDP.1: 20 residues within 4Å: Chain A: K.73, A.75, T.76, I.77, T.78, R.83, N.97, L.288, E.306, A.308, H.309, G.310, T.311, V.312, T.313, R.314, H.315, T.327, N.328, D.375 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:K.73, A:T.76, A:T.78, A:T.78, A:R.83, A:R.83, A:N.97, A:E.306, A:H.309, A:G.310, A:G.310, A:T.311, A:V.312, A:R.314, A:N.328 Water bridges: A:T.76, A:A.331 Salt bridges: A:H.315 NDP.3: 21 residues within 4Å: Chain B: K.73, A.75, T.76, I.77, T.78, R.83, N.97, L.288, G.289, E.306, A.307, A.308, H.309, G.310, T.311, V.312, R.314, H.315, T.327, N.328, D.375 15 PLIP interactions: 15 interactions with chain B Hydrogen bonds: B:T.76, B:T.78, B:R.83, B:N.97, B:E.306, B:G.310, B:T.311, B:V.312, B:N.328, B:N.328 Water bridges: B:E.306, B:E.306, B:A.331 Salt bridges: B:R.314, B:H.315

1 x 9UO: 6-(6-chloropyridin-2-yl)-N2,N4-bis[(2R)-1,1,1-trifluoropropan-2-yl]-1,3,5-triazine-2,4-diamine(Non-covalent)

9UO.2: 20 residues within 4Å: Chain A: W.125, V.255, V.258, L.259, W.267, D.273, V.276, Q.277, I.280, L.281 Chain B: W.125, V.255, V.258, L.259, W.267, D.273, V.276, Q.277, I.280, L.281 12 PLIP interactions: 6 interactions with chain B, 6 interactions with chain A Hydrophobic interactions: B:W.125, B:V.255, B:D.273, B:L.281, A:V.276, A:I.280, A:L.281 Hydrogen bonds: B:Q.277, B:Q.277, A:Q.277, A:Q.277 Halogen bonds: A:D.273

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ma, R. et al., Crystal structures of pan-IDH inhibitor AG-881 in complex with mutant human IDH1 and IDH2. Biochem. Biophys. Res. Commun. (2018)

Release Date

2018-09-05

Peptides

Isocitrate dehydrogenase [NADP], mitochondrial: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Isocitrate dehydrogenase [NADP], mitochondrial