SMTL ID : 6aez.1

Crystal structure of human CCL5 trimer

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.63 Å

Oligo State

hetero-2-4-mer

Ligands

12 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: E.55, K.57, R.60 Ligands: SO4.3 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain F Water bridges: A:K.57, A:K.57, A:R.60, F:R.22 Salt bridges: A:R.60 SO4.2: 5 residues within 4Å: Chain A: H.24, T.44, R.45, K.46, R.48 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.45, A:K.46 Salt bridges: A:H.24, A:R.45, A:K.46, A:R.48 SO4.3: 4 residues within 4Å: Chain A: E.55, K.56, K.57 Ligands: SO4.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.57 Salt bridges: A:K.56 SO4.4: 2 residues within 4Å: Chain B: K.56, K.57 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.57 Water bridges: B:W.58 Salt bridges: B:K.56 SO4.5: 4 residues within 4Å: Chain C: E.55, K.57, R.60 Ligands: SO4.7 5 PLIP interactions: 1 interactions with chain E, 4 interactions with chain C Water bridges: E:R.22, C:K.57, C:K.57, C:R.60 Salt bridges: C:R.60 SO4.6: 5 residues within 4Å: Chain C: H.24, T.44, R.45, K.46, R.48 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:T.44, C:R.45, C:K.46 Salt bridges: C:H.24, C:R.45, C:K.46, C:R.48 SO4.7: 4 residues within 4Å: Chain C: E.55, K.56, K.57 Ligands: SO4.5 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:K.57 Salt bridges: C:K.56 SO4.8: 2 residues within 4Å: Chain D: K.56, K.57 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:K.57 Water bridges: D:W.58 Salt bridges: D:K.56 SO4.9: 5 residues within 4Å: Chain E: H.24, T.44, R.45, K.46, R.48 8 PLIP interactions: 8 interactions with chain E Hydrogen bonds: E:T.44, E:R.45, E:K.46 Water bridges: E:R.48 Salt bridges: E:H.24, E:R.45, E:K.46, E:R.48 SO4.10: 3 residues within 4Å: Chain E: E.55, K.56, K.57 3 PLIP interactions: 3 interactions with chain E Hydrogen bonds: E:E.55, E:K.57 Salt bridges: E:K.56 SO4.11: 5 residues within 4Å: Chain F: H.24, T.44, R.45, K.46, R.48 8 PLIP interactions: 8 interactions with chain F Hydrogen bonds: F:T.44, F:R.45, F:K.46 Water bridges: F:R.48 Salt bridges: F:H.24, F:R.45, F:K.46, F:R.48 SO4.12: 3 residues within 4Å: Chain F: E.55, K.56, K.57 3 PLIP interactions: 3 interactions with chain F Hydrogen bonds: F:E.55, F:K.57 Salt bridges: F:K.56

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, Y.C. et al., Integrative Model to Coordinate the Oligomerization and Aggregation Mechanisms of CCL5. J.Mol.Biol. (2020)

Release Date

2019-08-07

Peptides

C-C motif chemokine 5: AC
C-C motif chemokine 5: BDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

C
B

B
C

D
C

E
A

F
A

C-C motif chemokine 5

C-C motif chemokine 5