SMTL ID : 6af2.1

Crystal structure of N-terminus deletion mutant of Mycobacterium avium diadenosine 5',5'''-P1,P4-tetraphosphate phosphorylase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-tetramer

Ligands

3 x SPM: SPERMINE(Non-covalent)

SPM.1: 4 residues within 4Å: Chain A: N.162, I.164 Ligands: 1PE.2, SPM.4 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:I.164 SPM.4: 7 residues within 4Å: Chain A: M.17 Chain C: E.52, P.54, I.58, L.81 Ligands: SPM.1, PEG.3 1 PLIP interactions: 1 interactions with chain C Hydrophobic interactions: C:L.81 SPM.6: 3 residues within 4Å: Chain D: M.17, N.162, I.164 2 PLIP interactions: 2 interactions with chain D Hydrophobic interactions: D:I.164 Hydrogen bonds: D:I.164

2 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.2: 4 residues within 4Å: Chain A: V.125, S.126, R.127 Ligands: SPM.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.127 1PE.7: 3 residues within 4Å: Chain D: V.125, S.126, L.176 No protein-ligand interaction detected (PLIP)

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.3: 3 residues within 4Å: Chain A: M.17 Chain C: R.178 Ligands: SPM.4 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:R.178 PEG.5: 4 residues within 4Å: Chain A: Y.31 Chain C: P.86, P.174, Q.175 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:Q.175

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mori, S. et al., Crystal structure of N-terminus deletion mutant of Mycobacterium avium diadenosine tetraphosphate phosphorylase. To Be Published

Release Date

2019-08-14

Peptides

HIT domain-containing protein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
B

D
D

HIT domain-containing protein