- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.62 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 8 x O4B: 1,4,7,10,13,16-HEXAOXACYCLOOCTADECANE(Non-covalent)
O4B.2: 3 residues within 4Å:- Chain A: E.40, L.41, K.44
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:K.44
O4B.3: 5 residues within 4Å:- Chain A: F.273, K.275, Q.279, F.280
- Ligands: O4B.17
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:K.275
O4B.9: 3 residues within 4Å:- Chain B: E.40, L.41, K.44
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:K.44
O4B.10: 5 residues within 4Å:- Chain B: F.273, K.275, Q.279, F.280
- Ligands: O4B.24
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:K.275
O4B.16: 3 residues within 4Å:- Chain C: E.40, L.41, K.44
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:K.44
O4B.17: 5 residues within 4Å:- Chain C: F.273, K.275, Q.279, F.280
- Ligands: O4B.3
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:K.275
O4B.23: 3 residues within 4Å:- Chain D: E.40, L.41, K.44
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:K.44
O4B.24: 5 residues within 4Å:- Chain D: F.273, K.275, Q.279, F.280
- Ligands: O4B.10
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:K.275
- 4 x CL: CHLORIDE ION(Non-functional Binders)
CL.4: 3 residues within 4Å:- Chain A: Q.281
- Chain C: Q.281
- Ligands: CL.18
Ligand excluded by PLIPCL.11: 3 residues within 4Å:- Chain B: Q.281
- Chain D: Q.281
- Ligands: CL.25
Ligand excluded by PLIPCL.18: 3 residues within 4Å:- Chain A: Q.281
- Chain C: Q.281
- Ligands: CL.4
Ligand excluded by PLIPCL.25: 3 residues within 4Å:- Chain B: Q.281
- Chain D: Q.281
- Ligands: CL.11
Ligand excluded by PLIP- 8 x PRO: PROLINE(Non-covalent)
PRO.5: 7 residues within 4Å:- Chain A: A.91, N.125, M.241, F.364, S.365
- Ligands: FAD.1, PRO.6
3 PLIP interactions:3 interactions with chain A,- Hydrophobic interactions: A:F.364
- Hydrogen bonds: A:N.125, A:S.365
PRO.6: 10 residues within 4Å:- Chain A: T.128, G.133, S.134, I.136, F.237, S.365, G.366
- Ligands: FAD.1, PRO.5, GLY.7
1 PLIP interactions:1 interactions with chain A,- Hydrophobic interactions: A:F.237
PRO.12: 7 residues within 4Å:- Chain B: A.91, N.125, M.241, F.364, S.365
- Ligands: FAD.8, PRO.13
3 PLIP interactions:3 interactions with chain B,- Hydrophobic interactions: B:F.364
- Hydrogen bonds: B:N.125, B:S.365
PRO.13: 10 residues within 4Å:- Chain B: T.128, G.133, S.134, I.136, F.237, S.365, G.366
- Ligands: FAD.8, PRO.12, GLY.14
1 PLIP interactions:1 interactions with chain B- Hydrophobic interactions: B:F.237
PRO.19: 7 residues within 4Å:- Chain C: A.91, N.125, M.241, F.364, S.365
- Ligands: FAD.15, PRO.20
3 PLIP interactions:3 interactions with chain C- Hydrophobic interactions: C:F.364
- Hydrogen bonds: C:N.125, C:S.365
PRO.20: 10 residues within 4Å:- Chain C: T.128, G.133, S.134, I.136, F.237, S.365, G.366
- Ligands: FAD.15, PRO.19, GLY.21
1 PLIP interactions:1 interactions with chain C,- Hydrophobic interactions: C:F.237
PRO.26: 7 residues within 4Å:- Chain D: A.91, N.125, M.241, F.364, S.365
- Ligands: FAD.22, PRO.27
3 PLIP interactions:3 interactions with chain D- Hydrophobic interactions: D:F.364
- Hydrogen bonds: D:N.125, D:S.365
PRO.27: 10 residues within 4Å:- Chain D: T.128, G.133, S.134, I.136, F.237, S.365, G.366
- Ligands: FAD.22, PRO.26, GLY.28
1 PLIP interactions:1 interactions with chain D- Hydrophobic interactions: D:F.237
- 4 x GLY: GLYCINE(Non-covalent)
GLY.7: 4 residues within 4Å:- Chain A: Y.137, H.238, M.241
- Ligands: PRO.6
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:Y.137, A:Y.137
- Water bridges: A:H.238, A:K.245, A:K.245
- Salt bridges: A:H.238, A:K.245
GLY.14: 4 residues within 4Å:- Chain B: Y.137, H.238, M.241
- Ligands: PRO.13
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:Y.137, B:Y.137
- Water bridges: B:H.238, B:K.245, B:K.245
- Salt bridges: B:H.238, B:K.245
GLY.21: 4 residues within 4Å:- Chain C: Y.137, H.238, M.241
- Ligands: PRO.20
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:Y.137
- Water bridges: C:K.245, C:K.245
- Salt bridges: C:H.238, C:K.245
GLY.28: 4 residues within 4Å:- Chain D: Y.137, H.238, M.241
- Ligands: PRO.27
5 PLIP interactions:5 interactions with chain D- Hydrogen bonds: D:Y.137
- Water bridges: D:K.245, D:K.245
- Salt bridges: D:H.238, D:K.245
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lee, C.-C. et al., Crystal Structure of PigA: A Prolyl Thioester-Oxidizing Enzyme in Prodigiosin Biosynthesis. Chembiochem (2019)
- Release Date
- 2018-09-05
- Peptides
- L-prolyl-[peptidyl-carrier protein] dehydrogenase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.62 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 8 x O4B: 1,4,7,10,13,16-HEXAOXACYCLOOCTADECANE(Non-covalent)
- 4 x CL: CHLORIDE ION(Non-functional Binders)
- 8 x PRO: PROLINE(Non-covalent)
- 4 x GLY: GLYCINE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lee, C.-C. et al., Crystal Structure of PigA: A Prolyl Thioester-Oxidizing Enzyme in Prodigiosin Biosynthesis. Chembiochem (2019)
- Release Date
- 2018-09-05
- Peptides
- L-prolyl-[peptidyl-carrier protein] dehydrogenase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A