SMTL ID : 6afb.1

DJ-1 C106S incubated with isatin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

4 x ISN: ISATIN(Covalent)

ISN.1: 7 residues within 4Å: Chain A: K.99, G.100, L.101, K.148, G.150, L.151, A.171 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.101, A:L.101, A:K.148, A:L.151 Hydrogen bonds: A:A.171 ISN.2: 7 residues within 4Å: Chain A: E.163, L.166, E.170, K.175, A.178, A.179, K.182 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.166, A:E.170, A:K.175, A:A.178, A:K.182 Water bridges: A:E.163 ISN.5: 7 residues within 4Å: Chain B: K.99, G.100, L.101, K.148, G.150, L.151, A.171 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:L.101, B:L.101, B:K.148, B:L.151 Hydrogen bonds: B:A.171 ISN.6: 7 residues within 4Å: Chain B: E.163, L.166, E.170, K.175, A.178, A.179, K.182 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:L.166, B:E.170, B:K.175, B:A.178, B:K.182 Water bridges: B:E.163

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 3 residues within 4Å: Chain A: R.48, G.75, N.76 Ligand excluded by PLIP CL.7: 3 residues within 4Å: Chain B: R.48, G.75, N.76 Ligand excluded by PLIP

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.4: 3 residues within 4Å: Chain A: A.107, H.126, L.128 2 PLIP interactions: 2 interactions with chain A Water bridges: A:A.107 pi-Cation interactions: A:H.126 DMS.8: 3 residues within 4Å: Chain B: A.107, H.126, L.128 2 PLIP interactions: 2 interactions with chain B Water bridges: B:A.107 pi-Cation interactions: B:H.126

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tashiro, S. et al., Discovery and Optimization of Inhibitors of the Parkinson's Disease Associated Protein DJ-1. ACS Chem. Biol. (2018)

Release Date

2018-08-29

Peptides

Protein/nucleic acid deglycase DJ-1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Protein/nucleic acid deglycase DJ-1

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