SMTL ID : 6agp.1

Structure of Rac1 in the low-affinity state for Mg2+

Coordinates

PDB Format

Method

SOLUTION NMR

Oligo State

monomer

Ligands

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 15 residues within 4Å: Chain A: D.11, G.12, A.13, V.14, G.15, K.16, T.17, C.18, K.116, D.118, L.119, S.158, A.159, C.160 Ligands: MG.2 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:A.13, A:V.14, A:G.15, A:K.16, A:T.17, A:T.17, A:C.18, A:K.116, A:K.116, A:A.159, A:C.160 Salt bridges: A:K.16, A:D.118

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: K.16, T.17 Ligands: GDP.1 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:T.17

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Toyama, Y. et al., Conformational landscape alternations promote oncogenic activities of Ras-related C3 botulinum toxin substrate 1 as revealed by NMR. Sci Adv (2019)

Release Date

2019-03-20

Peptides

Ras-related C3 botulinum toxin substrate 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ras-related C3 botulinum toxin substrate 1