SMTL ID : 6ah3.1

Cryo-EM structure of yeast Ribonuclease P with pre-tRNA substrate

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-2-1-mer

Ligands

2 x MG: MAGNESIUM ION(Non-functional Binders)

MG.1: 5 residues within 4Å: Chain A: A.91, U.92, U.93 Chain L: G.5 Ligands: MG.2 No protein-ligand interaction detected (PLIP) MG.2: 6 residues within 4Å: Chain A: A.91, G.343, A.344 Chain L: A.4, G.5 Ligands: MG.1 No protein-ligand interaction detected (PLIP)

1 x ZN: ZINC ION(Non-covalent)

ZN.3: 5 residues within 4Å: Chain K: C.90, C.93, R.95, C.115, C.117 3 PLIP interactions: 3 interactions with chain K Metal complexes: K:C.90, K:C.115, K:C.117

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lan, P. et al., Structural insight into precursor tRNA processing by yeast ribonuclease P. Science (2018)

Release Date

2018-10-17

Peptides

Ribonucleases P/MRP protein subunit POP1: B
Ribonucleases P/MRP protein subunit POP3: C
RNases MRP/P 32.9 kDa subunit: D
Ribonuclease P/MRP protein subunit POP5: E
Ribonucleases P/MRP protein subunit POP6: F
Ribonucleases P/MRP protein subunit POP7: G
Ribonucleases P/MRP protein subunit POP8: H
Ribonuclease P/MRP protein subunit RPP1: IJ
Ribonuclease P protein subunit RPR2: K

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

Ribonucleases P/MRP protein subunit POP1

Ribonucleases P/MRP protein subunit POP3

RNases MRP/P 32.9 kDa subunit

Ribonuclease P/MRP protein subunit POP5

Ribonucleases P/MRP protein subunit POP6

Ribonucleases P/MRP protein subunit POP7

Ribonucleases P/MRP protein subunit POP8

Ribonuclease P/MRP protein subunit RPP1

Ribonuclease P protein subunit RPR2

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