SMTL ID : 6ahf.1

CryoEM Reconstruction of Hsp104 N728A Hexamer

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-hexamer

Ligands

6 x AGS: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER(Non-covalent)(Covalent)

AGS.1: 14 residues within 4Å: Chain C: P.185, V.186, I.187, P.214, G.215, I.216, G.217, K.218, T.219, A.220, I.351, L.355, P.389, L.393 9 PLIP interactions: 9 interactions with chain C Hydrogen bonds: C:I.187, C:G.188, C:G.215, C:G.217, C:T.219, C:T.219, C:A.220 Salt bridges: C:K.218, C:K.218 AGS.2: 14 residues within 4Å: Chain D: V.186, I.187, G.188, I.211, E.213, P.214, G.215, I.216, G.217, K.218, I.221, I.351, D.390, L.393 10 PLIP interactions: 10 interactions with chain D Hydrogen bonds: D:I.187, D:P.214, D:G.215, D:I.216, D:G.217, D:K.218, D:K.218, D:D.390 Salt bridges: D:K.218, D:K.218 AGS.3: 15 residues within 4Å: Chain D: R.333 Chain E: P.185, V.186, I.187, G.215, I.216, G.217, K.218, T.219, A.220, D.284, I.351, L.355, P.389, L.393 12 PLIP interactions: 7 interactions with chain E, 5 interactions with chain D Hydrogen bonds: E:I.187, E:I.216, E:K.218, E:T.219, E:T.219, E:A.220, D:R.333, D:R.333, D:R.333 Salt bridges: E:K.218, D:R.333, D:R.333 AGS.4: 13 residues within 4Å: Chain D: E.761 Chain E: E.579, V.580, V.581, L.615, S.616, G.617, S.618, G.619, K.620, T.621, E.622, R.826 12 PLIP interactions: 12 interactions with chain E Hydrogen bonds: E:V.580, E:G.617, E:S.618, E:S.618, E:G.619, E:K.620, E:T.621, E:T.621, E:E.622, E:R.826 Salt bridges: E:K.620, E:K.620 AGS.5: 11 residues within 4Å: Chain F: V.186, I.187, G.188, P.214, G.215, I.216, G.217, K.218, T.219, A.220, I.221 10 PLIP interactions: 10 interactions with chain F Hydrogen bonds: F:I.187, F:G.215, F:I.216, F:I.216, F:G.217, F:K.218, F:K.218, F:K.218, F:I.221 Salt bridges: F:K.218 AGS.6: 12 residues within 4Å: Chain F: S.616, G.617, S.618, K.620, T.621, E.622, I.780, I.783, R.787, M.823, A.825, R.826 10 PLIP interactions: 10 interactions with chain F Hydrogen bonds: F:S.616, F:S.616, F:K.620, F:T.621, F:T.621, F:E.622, F:R.787, F:R.826 Salt bridges: F:K.620, F:K.620

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, X. et al., Heat shock protein 104 (HSP104) chaperones soluble Tau via a mechanism distinct from its disaggregase activity. J. Biol. Chem. (2019)

Release Date

2019-02-13

Peptides

Heat shock protein 104: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Heat shock protein 104