SMTL ID : 6ahy.1 (2 other biounits)

Wnt signaling complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 7 residues within 4Å: Chain B: R.49, N.54, T.56, F.257, G.258, D.261, R.262 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:F.257

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 2 residues within 4Å: Chain A: G.20, N.22 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.22 NAG.4: 3 residues within 4Å: Chain B: N.265, T.267, S.268 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.265

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 7 residues within 4Å: Chain B: S.76, A.77, H.80, R.147, M.150, N.151, N.154 Ligand excluded by PLIP

1 x PAM: PALMITOLEIC ACID(Covalent)

PAM.5: 10 residues within 4Å: Chain A: Q.44, F.45, P.47, L.48, E.50, I.51, M.95, P.103 Chain B: L.175, S.176 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.45, A:L.48, A:E.50, A:I.51

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hirai, H. et al., Crystal structure of a mammalian Wnt-frizzled complex. Nat.Struct.Mol.Biol. (2019)

Release Date

2019-05-01

Peptides

Frizzled-8: A
Proto-oncogene Wnt-3: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Frizzled-8

Proto-oncogene Wnt-3

Related Entries With Identical Sequence