- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.70 Å
- Oligo State
- monomer
- Ligands
- 1 x DT- DG- DG- DT- DA- DT- DT- DG: DNA (8-MER)(Non-covalent)
- 10 x K: POTASSIUM ION(Non-covalent)(Non-functional Binders)
K.2: 5 residues within 4Å:- Chain A: L.627, T.628, F.630, Y.660, T.661
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:T.628, A:F.630, A:Y.660
K.3: 5 residues within 4Å:- Chain A: G.365, Y.366, G.369, G.370, A.371
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:G.369, A:A.371
K.4: 1 residues within 4Å:- Chain A: E.61
No protein-ligand interaction detected (PLIP)K.5: 1 residues within 4Å:- Chain A: K.115
No protein-ligand interaction detected (PLIP)K.6: 3 residues within 4Å:- Chain A: I.230, L.233, E.236
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:I.230, A:L.233
K.7: 3 residues within 4Å:- Chain A: E.588, R.590, N.592
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:E.588, A:R.590
K.8: 2 residues within 4Å:- Chain A: Q.1354
- Chain B: A.68
2 PLIP interactions:1 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:Q.1354, H2O.1
K.9: 3 residues within 4Å:- Chain A: D.368, G.369
- Chain B: U.22
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:G.369
K.14: 3 residues within 4Å:- Chain A: T.1106
- Chain B: A.65, U.66
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:T.1106
K.15: 1 residues within 4Å:- Chain B: G.21
No protein-ligand interaction detected (PLIP)- 3 x MG: MAGNESIUM ION(Non-functional Binders)
- 3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.11: 4 residues within 4Å:- Chain A: R.465
- Chain B: G.62, U.63, U.64
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.465, A:R.465
- Water bridges: A:R.70
EDO.12: 6 residues within 4Å:- Chain A: F.1109, I.1172, M.1173, R.1175, S.1176
- Chain B: A.52
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:M.1173, A:R.1175, A:S.1176
EDO.13: 8 residues within 4Å:- Chain A: Y.140, R.143, H.164, F.168, N.411, H.419
- Chain B: G.19, C.20
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.143, A:N.411
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nishimasu, H. et al., Engineered CRISPR-Cas9 nuclease with expanded targeting space. Science (2018)
- Release Date
- 2018-10-31
- Peptides
- CRISPR-associated endonuclease Cas9/Csn1: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.70 Å
- Oligo State
- monomer
- Ligands
- 1 x DT- DG- DG- DT- DA- DT- DT- DG: DNA (8-MER)(Non-covalent)
- 10 x K: POTASSIUM ION(Non-covalent)(Non-functional Binders)
- 3 x MG: MAGNESIUM ION(Non-functional Binders)
- 3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nishimasu, H. et al., Engineered CRISPR-Cas9 nuclease with expanded targeting space. Science (2018)
- Release Date
- 2018-10-31
- Peptides
- CRISPR-associated endonuclease Cas9/Csn1: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A