SMTL ID : 6ait.1

Crystal structure of E. coli BepA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-hexamer

Ligands

6 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.93, H.97, F.153, E.158, H.203 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:H.93, A:H.97, A:E.158, A:E.158, A:H.203 ZN.3: 5 residues within 4Å: Chain B: H.93, H.97, F.153, E.158, H.203 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:H.93, B:H.97, B:E.158, B:E.158, B:H.203 ZN.5: 4 residues within 4Å: Chain C: H.93, H.97, E.158, H.203 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:H.93, C:H.97, C:E.158, C:E.158, C:H.203 ZN.7: 4 residues within 4Å: Chain D: H.93, H.97, E.158, H.203 5 PLIP interactions: 5 interactions with chain D Metal complexes: D:H.93, D:H.97, D:E.158, D:E.158, D:H.203 ZN.9: 4 residues within 4Å: Chain E: H.93, H.97, E.158, H.203 5 PLIP interactions: 5 interactions with chain E Metal complexes: E:H.93, E:H.97, E:E.158, E:E.158, E:H.203 ZN.11: 4 residues within 4Å: Chain F: H.93, H.97, E.158, H.203 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:H.93, F:H.97, F:E.158, F:H.203

6 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.2: 6 residues within 4Å: Chain A: D.26, P.27, D.304, D.308, N.338, N.341 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.26, A:D.304, A:N.338, A:N.341 TRS.4: 6 residues within 4Å: Chain B: D.26, P.27, D.304, D.308, N.338, N.341 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.304, B:N.338, B:N.341 TRS.6: 4 residues within 4Å: Chain C: P.27, D.304, D.308, N.338 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:D.304 TRS.8: 6 residues within 4Å: Chain D: D.26, P.27, R.237, D.304, D.308, N.338 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:R.237, D:D.308, D:N.338 TRS.10: 5 residues within 4Å: Chain E: P.27, D.304, D.308, N.338, N.341 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:D.308, E:N.341 TRS.12: 3 residues within 4Å: Chain F: D.304, D.308, N.338 3 PLIP interactions: 3 interactions with chain F Hydrogen bonds: F:D.304, F:D.308, F:N.338

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shahrizal, M. et al., Structural Basis for the Function of the beta-Barrel Assembly-Enhancing Protease BepA. J. Mol. Biol. (2019)

Release Date

2018-12-26

Peptides

Beta-barrel assembly-enhancing protease: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Beta-barrel assembly-enhancing protease