SMTL ID : 6aje.1 (3 other biounits)

Crystal structure of DHODH in complex with ferulenol from Eimeria tenella

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.65 Å

Oligo State

monomer

Ligands

1 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.1: 28 residues within 4Å: Chain A: A.84, A.85, G.86, K.89, G.108, T.109, I.123, I.132, N.134, C.136, N.171, N.202, K.283, T.311, N.312, T.313, S.333, G.334, S.361, G.362, G.363, I.364, E.382, V.383, Y.384, T.385, S.386 Ligands: ORO.2 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:I.123, A:I.132, A:N.134, A:Y.384 Hydrogen bonds: A:A.85, A:G.86, A:T.109, A:T.109, A:N.171, A:K.283, A:K.283, A:N.312, A:S.333, A:G.334, A:S.361, A:G.362, A:G.363, A:I.364, A:Y.384, A:T.385, A:T.385, A:S.386

1 x ORO: OROTIC ACID(Non-covalent)

ORO.2: 12 residues within 4Å: Chain A: K.89, N.134, R.135, C.136, G.137, F.138, N.202, S.205, N.207, N.312, T.313 Ligands: FMN.1 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:F.138 Hydrogen bonds: A:N.134, A:G.137, A:F.138, A:N.202, A:N.207, A:N.312, A:N.312, A:T.313 Salt bridges: A:K.89

1 x 9AU: 4-oxidanyl-3-[(2~{E},6~{E})-3,7,11-trimethyldodeca-2,6,10-trienyl]chromen-2-one(Non-covalent)

9AU.3: 11 residues within 4Å: Chain A: P.39, P.41, A.44, H.45, M.47, V.48, F.87, I.123, R.125, Y.384, I.388 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:P.39, A:P.41, A:A.44, A:H.45, A:M.47, A:V.48, A:F.87, A:I.123, A:Y.384, A:I.388, A:I.388 Hydrogen bonds: A:R.125, A:R.125

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sato, D. et al., Structural and Biochemical Features of Eimeria tenella Dihydroorotate Dehydrogenase, a Potential Drug Target. Genes (Basel) (2020)

Release Date

2019-08-28

Peptides

Dihydroorotate dehydrogenase (quinone), mitochondrial: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Dihydroorotate dehydrogenase (quinone), mitochondrial

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