SMTL ID : 6ak2.1 (1 other biounit)

Crystal structure of the syntenin PDZ1 domain in complex with the peptide inhibitor KSL-128018

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.87 Å

Oligo State

monomer

Ligands

1 x SER- HIS- TRP- TBG- 004- ASP- ILE: peptide inhibitor KSL-128018(Non-covalent)

SER-HIS-TRP-TBG-004-ASP-ILE.1: 19 residues within 4Å: Chain A: K.14, I.15, G.16, L.17, R.18, L.19, K.20, S.21, V.22, D.23, I.26, Q.29, W.59, S.60, S.61, A.64, H.65, L.68, K.69 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:L.17, A:R.18, A:K.20, A:I.26, A:A.64, A:L.68 Hydrogen bonds: A:I.15, A:G.16, A:L.17, A:L.17, A:L.17, A:L.17, A:L.19, A:L.19, A:S.21, A:S.21, A:D.23, A:D.23 Water bridges: A:K.20, A:K.20 Salt bridges: A:R.18 pi-Stacking: A:H.65

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Haugaard-Kedstrom, L.M. et al., A High-Affinity Peptide Ligand Targeting Syntenin Inhibits Glioblastoma. J.Med.Chem. (2021)

Release Date

2019-09-04

Peptides

Syntenin-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Syntenin-1

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