SMTL ID : 6akj.1

The crystal structure of EMC complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-dimer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: D.27 Chain B: S.133 Ligands: SO4.4 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.133 SO4.2: 2 residues within 4Å: Chain A: H.100, E.103 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.103 Salt bridges: A:H.100 SO4.3: 2 residues within 4Å: Chain A: W.96, H.100 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:H.100 SO4.4: 4 residues within 4Å: Chain B: S.133, R.134, H.135 Ligands: SO4.1 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:H.135 Salt bridges: B:H.135 SO4.5: 3 residues within 4Å: Chain B: N.53, K.129, Y.130 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.53, B:K.129, B:K.129

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xie, G. et al., A conserved dimer interface connects ERH and YTH family proteins to promote gene silencing. Nat Commun (2019)

Release Date

2019-02-13

Peptides

Enhancer of rudimentary homolog,YTH domain-containing protein mmi1 fusion protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Enhancer of rudimentary homolog,YTH domain-containing protein mmi1 fusion protein