SMTL ID : 6aky.1

The Crystal structure of Human Chemokine Receptor CCR5 in complex with compound 34

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.231, C.234, C.264, C.267 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.231, A:C.234, A:C.264, A:C.267

1 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLC.2: 4 residues within 4Å: Chain A: P.303, I.306, V.307, L.310 No protein-ligand interaction detected (PLIP)

1 x A4X: 4,4-difluoro-N-[(1S)-3-{(3-exo)-3-[3-methyl-5-(propan-2-yl)-4H-1,2,4-triazol-4-yl]-8-azabicyclo[3.2.1]octan-8-yl}-1-(thiophen-3-yl)propyl]cyclohexane-1-carboxamide(Non-covalent)

A4X.3: 19 residues within 4Å: Chain A: Y.39, W.88, Y.91, T.107, Y.110, F.111, F.114, F.184, K.193, Q.196, T.197, I.200, W.301, Y.304, L.308, T.312, E.336, T.337, M.340 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:W.88, A:W.88, A:Y.91, A:F.111, A:Q.196, A:I.200, A:E.336, A:M.340 Hydrogen bonds: A:Y.39, A:Y.304 Salt bridges: A:E.336 pi-Stacking: A:W.88, A:Y.110, A:F.114 Halogen bonds: A:T.312

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Peng, P. et al., Structure-Based Design of 1-Heteroaryl-1,3-propanediamine Derivatives as a Novel Series of CC-Chemokine Receptor 5 Antagonists. J. Med. Chem. (2018)

Release Date

2018-10-24

Peptides

C-C chemokine receptor type 5,Rubredoxin,C-C chemokine receptor type 5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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C-C chemokine receptor type 5,Rubredoxin,C-C chemokine receptor type 5

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