SMTL ID : 6ala.2 (1 other biounit)

Crystal structure of H108A peptidylglycine alpha-hydroxylating monooxygenase (PHM) in complex with citrate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.59 Å

Oligo State

monomer

Ligands

1 x CU: COPPER (II) ION(Non-covalent)

CU.1: 4 residues within 4Å: Chain A: H.63, H.198, H.200 Ligands: FLC.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.63, A:H.198, A:H.200

1 x FLC: CITRATE ANION(Non-covalent)

FLC.2: 14 residues within 4Å: Chain A: Y.35, A.64, L.66, Q.126, H.128, R.196, H.198, H.200, G.263, M.270, N.272, Y.274 Ligands: CU.1, GOL.3 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:A.64 Hydrogen bonds: A:Y.274 Salt bridges: A:H.63, A:H.128, A:R.196, A:H.198, A:H.198, A:H.200

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 7 residues within 4Å: Chain A: L.66, L.162, M.164, M.270, N.272, Y.274 Ligands: FLC.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.272, A:N.272, A:Y.274 GOL.4: 4 residues within 4Å: Chain A: R.248, P.296, F.299, R.300 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.248 Water bridges: A:R.248, A:F.299 GOL.5: 8 residues within 4Å: Chain A: Y.161, C.183, Q.184, Y.185, K.186, M.187, T.289 Ligands: GOL.6 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.161, A:Y.161, A:K.186, A:T.289 GOL.6: 4 residues within 4Å: Chain A: M.187, M.288, T.289 Ligands: GOL.5 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.289, A:T.289 GOL.7: 3 residues within 4Å: Chain A: R.210, V.237, D.238 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.210, A:R.210, A:D.238 GOL.8: 5 residues within 4Å: Chain A: V.166, T.168, V.169, H.261, I.262 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.168, A:I.262

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Maheshwari, S. et al., Effects of copper occupancy on the conformational landscape of peptidylglycine alpha-hydroxylating monooxygenase. Commun Biol (2018)

Release Date

2018-07-18

Peptides

Peptidyl-glycine alpha-amidating monooxygenase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Peptidyl-glycine alpha-amidating monooxygenase

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