SMTL ID : 6alb.1

CREBBP bromodomain in complex with Cpd 30 (1-(3-(3-(1-methyl-1H-pyrazol-4-yl)isoquinolin-8-yl)-1-(tetrahydro-2H-pyran-4-yl)-1,4,6,7-tetrahydro-5H-pyrazolo[4,3-c]pyridin-5-yl)ethan-1-one)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

monomer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.120, C.121, H.212, C.215 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.120, A:C.121, A:H.212, A:C.215 ZN.2: 4 residues within 4Å: Chain A: C.204, C.207, C.229, C.232 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.204, A:C.207, A:C.229, A:C.232 ZN.3: 4 residues within 4Å: Chain A: C.134, C.140, C.158, C.161 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.134, A:C.140, A:C.158

1 x B3P: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-covalent)

B3P.4: 8 residues within 4Å: Chain A: W.79, N.83, W.86, Y.96, Y.125, D.194, T.195, L.196 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:W.86 Hydrogen bonds: A:N.83, A:Y.125, A:L.196, A:L.196

1 x BKJ: 1-{3-[3-(1-methyl-1H-pyrazol-4-yl)isoquinolin-8-yl]-1-(oxan-4-yl)-1,4,6,7-tetrahydro-5H-pyrazolo[4,3-c]pyridin-5-yl}ethan-1-one(Non-covalent)

BKJ.5: 11 residues within 4Å: Chain A: L.30, P.31, F.32, Q.34, V.36, L.41, I.43, N.89, R.94, V.95, F.98 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:P.31, A:F.32, A:V.36, A:L.41, A:L.41, A:I.43, A:V.95 Hydrogen bonds: A:N.89 Water bridges: A:Y.46

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Murray, J.M., Design and Synthesis of A Biaryl Series As Inhibitors for the Bromodomains of CBP/P300. To be published

Release Date

2018-10-17

Peptides

CREB-binding protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CREB-binding protein