SMTL ID : 6amb.1

Crystal Structure of the Afadin RA1 domain in complex with HRAS

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)

GNP.1: 24 residues within 4Å: Chain A: A.13, G.14, G.15, V.16, G.17, K.18, S.19, A.20, F.30, V.31, D.32, Y.34, P.36, T.37, G.62, Q.63, N.118, K.119, D.121, L.122, S.147, A.148, K.149 Ligands: MG.2 24 PLIP interactions: 24 interactions with chain A Hydrogen bonds: A:G.15, A:V.16, A:G.17, A:K.18, A:K.18, A:S.19, A:S.19, A:A.20, A:V.31, A:T.37, A:T.37, A:G.62, A:Q.63, A:Q.63, A:N.118, A:K.119, A:K.119, A:A.148, A:K.149 Water bridges: A:D.35 Salt bridges: A:D.121 pi-Stacking: A:F.30, A:F.30 pi-Cation interactions: A:K.119

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: S.19, D.35, T.37 Ligands: GNP.1 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:S.19, A:T.37, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Smith, M.J. et al., Evolution of AF6-RAS association and its implications in mixed-lineage leukemia. Nat Commun (2017)

Release Date

2017-11-01

Peptides

GTPase HRas: A
Afadin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

GTPase HRas

Afadin