SMTL ID : 6amx.1

Crystal Structure of Nucelotide Binding Domain of O-antigen polysaccharide ABC-transporter

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

monomer

Ligands

6 x PE5: 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL(Non-covalent)

PE5.1: 6 residues within 4Å: Chain A: S.60, K.64, T.70, L.86, L.87, D.165 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.64 PE5.2: 3 residues within 4Å: Chain A: F.151, C.179, L.183 No protein-ligand interaction detected (PLIP) PE5.3: 3 residues within 4Å: Chain A: E.101, Y.104, L.121 No protein-ligand interaction detected (PLIP) PE5.4: 2 residues within 4Å: Chain A: N.55, E.166 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.55 PE5.5: 7 residues within 4Å: Chain A: L.86, L.89, G.90, F.93, Y.95, M.147, A.150 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.93, A:Y.95 Hydrogen bonds: A:Y.95 PE5.6: 1 residues within 4Å: Chain A: Y.95 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bi, Y. et al., Architecture of a channel-forming O-antigen polysaccharide ABC transporter. Nature (2018)

Release Date

2017-11-29

Peptides

ABC transporter: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ABC transporter

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